Publications
2024
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Garcia-Guillen J., El-Sherif E*, "From Genes to Patterns: A Framework for Modeling the Emergence of Embryonic Development from Transcriptional Regulation," BioRxiv 2024. *Corresponding Author.
2023
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Mau C, Rudolf H, Strobl F, Schmid B, Regensburger B, Palmisano R, Stelzer E, Taher L*, El-Sherif E*, “How enhancers regulate wavelike gene expression patterns” eLife 12:e84969, 2023. *Corresponding Authors.
2021
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Diaz-Cuadros M.*, Pourquié O.*, El-Sherif E.*, “Patterning with clocks and genetic cascades: segmentation and regionalization of vertebrate vs. insect body plans”, literature review, PLOS Genetics 2021. *Corresponding Authors.
2020
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Jutras-Dubé L., El-Sherif E.*, François P.* “Geometric models for robust encoding of dynamical information into embryonic patterns”, eLife 2020. *Corresponding Authors.
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Müller P.*, El-Sherif E.*. “A systems-level view of pattern formation mechanisms in development”, Developmental Biology 2020 (Editorial). *Corresponding Authors.
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Rudolf H.†, Zellner C.†, El-Sherif E.*. “Speeding up anterior-posterior patterning of insects by differential initialization of the gap gene cascade,” Developmental Biology 2020. † Co-first Authors; *Corresponding Author.
2018
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Boos A., Distler J, Rudolf H., Klingler M.*, El-Sherif E.*. “A re-inducible genetic cascade patterns the anterior-posterior axis of insects in a threshold-free fashion.” eLife 7, e41208, 2018. *Corresponding Authors.
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Kuhlmann L, El-Sherif E.*. “Speed Regulation and Gradual Enhancer Switching Models as Flexible and Evolvable Patterning Mechanisms.” bioRxiv, 261891, 2018. *Corresponding Author.
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Lai YT, Deem KD, Borras-Castells F, Sambrani N, Rudolf H, Suryamohan K, El-Sherif E., Halfon MS, McKay DJ, Tomoyasu Y. “Enhancer identification and activity evaluation in the red flour beetle, .” Development 2018.
2017
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Zhu X, Rudolf H, Healey L., Francois P, Brown SJ, Klingler M, El-Sherif E.*, “Speed regulation of genetic cascades allows for evolvability in the body plan specification of insects.” PNAS 2017. *Corresponding Author.
2016
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El-Sherif E., Levine M, “Shadow enhancers mediate dynamic shifts of gap gene expression in the Drosophila embryo,” Current Biology, vol. 26, no. 9, p1164–1169, 2016.
2014
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El-Sherif E., Zhu X, Fu J, Brown SJ, “Caudal regulates the spatiotemporal dynamics of pair-rule waves in Tribolium,” PLoS Genetics 2014.
2012
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El-Sherif E., Averof M, Brown SJ, “A segmentation clock operating in blastoderm and germband stages of Tribolium development,” Development, vol. 139, no 23, pp 4341-6, 2012.
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Lynch J*, El-Sherif E.*, Brown SJ, “Comparisons of the embryonic development of Drosophila, Nasonia, and Tribolium," WIRES Developmental Biology, vol. 1, no. 1, pp. 16-39, 2012. *Co-first Authors.
Publications in Machine Learning and Image Processing
2010
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El-Sherif E., Abdelazeem S, “A Model-Based Approach for Building Optimum Classification Cascades,” INTECH, 2010.
2008
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El-Sherif E., Abdelazeem S, Abu El-Yazeed MF, “Automatic Generation of Optimum Classification Cascades,” 19th International Conference on Pattern Recognition (ICPR 2008), pp. 1-4, December 2008.
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Sherif Abdelazeem, El-Sherif E. “Arabic Handwritten Digit Recognition”, International Journal on Document Analysis and Recognition, vol. 11, no. 3, December, 2008.
2007
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El-Sherif E., Abdelazeem S, “A Two-Stage System for Arabic Handwritten Digit Recognition Tested on a New Large Database”, International Conference on Artificial Intelligence and Pattern Recognition (AIPR-07), Orlando, FL, USA, July 2007.